rs33780446 SNP Detail

Summary

• ID
  rs33780446
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107454052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGTTTGG TTTGTATGTT
  TTGTCATTGA TATTGCTTTG AGACAAGGTC TTGTTAGATG CCGTGACTGG TATAGTACTT
  GCTGAGTAGC TCAGTCTAGC CTCACACTCA CAGCAATCCT CCTGCCTCAA CCTCCCAAGT
  GCTGGGATGA CAGGCATGCA CTACTATGCC TGGCTGCTGA TGTTGAACAG AAAGATAACC
  R
  CTGTTGACTC AAAGGGATGG GAAGCAAGAG AATGTAGGTG GAGGTGAGTG GAAAGAGATG
  TAAGACGCAA AAAGCACAGA AGGAAGTACC CAGATGTCTA TACAGTGCAA ATTAGCCCCA
  AATGGGGTCA GAGGGAACAG GAGGATATGC ATGTGGCAGA GAAGAGGTCC AAGAAGGGAA
  GCAGAAAGGA CAGAAGAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46857054	NES10706213	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33780446					SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46857054	NES10706213	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107454052 () rs orientation: forward

Symbol	Name	Function Class
Gm36097	predicted gene, 36097	1264 bp upstream
Rr582995	regulatory region 582995	375 bp distal
Rr582996	regulatory region 582996	3 bp proximal