rs33780449 SNP Detail

Summary

• ID
  rs33780449
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107454298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGGAAAG AGATGTAAGA
  CGCAAAAAGC ACAGAAGGAA GTACCCAGAT GTCTATACAG TGCAAATTAG CCCCAAATGG
  GGTCAGAGGG AACAGGAGGA TATGCATGTG GCAGAGAAGA GGTCCAAGAA GGGAAGCAGA
  AAGGACAGAA GAAAGGTGAC CCGAGAAAGG AAGGGAGCCA GAGGAGGTGG TGACCAGCAG
  R
  GAGGACCATC TGCTCCAGAG GGCACCAGGA CCTGGATTTG GCAACTATTT CCACCTTAGC
  CACCTCAGGG GGTGACAGCT GGCTTGGCAG CAAGATCCAG GGCAGCCTGC CCACTAGCCA
  CTCCCCTGCC ATGGACTGGC AGACACCCAA CCCCAGCCCA GAGCACGAGA ATAATTAGCC
  AAGCCAGGCC AGGCATCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46857057	NES10706214	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33780449					SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46857057	NES10706214	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107454298 () rs orientation: forward

Symbol	Name	Function Class
Gm36097	predicted gene, 36097	1018 bp upstream
Rr582995	regulatory region 582995	621 bp distal
Rr582996	regulatory region 582996	within coordinates