rs33780578 SNP Detail

Summary

• ID
  rs33780578
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:25767740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCCTTTG AACCCTCCCA
  CTGGGCCAGG CCAGAGATAT CTACACATAT CCTCCAGTAC ACAGACCAAC ACGCACAGGC
  ACACACACAG ATGTACTCAC AGGCACACCA CAAAACAGAC CAAGTTTAAT AAAACCTGTT
  ATTACATTCA AGGTTGAAAT GACCATCAAC ATTATGAAAC ATTTGAAACA TTTATTCTCT
  M
  TTTTCATAGG GGACTGTCTA GAAAACTGTT TCTTGGTTTT TGTTCTTCTC CTGTGTATCC
  TTGTAAGGCC ATATGGCAAG ACCTGTAGTT CAGAGTGAAG ACCAGTATTT AAACACATGC
  CGGTCATGTT TTGCTCTAGA AGTGCACTTC TTGTAAAGAC AAGCGGTCAC AATGGCCTGA
  AGAGCTCAGC ATGAAGTGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46858336	NES10843025	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33780578					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46858336	NES10843025	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:25767740 () rs orientation: forward

Symbol	Name	Function Class
Nlgn1	neuroligin 1	within coordinates
Tssr32784	transcription start site region 32784	1174 bp upstream