rs33780595 SNP Detail

Summary

• ID
  rs33780595
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:25599296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCATCTC CAATTGACAC
  CACTTGCAAA GGAAAAATTA GGGTTTTCAA CAGAGTCTCA CCAGGTGTAT TAACTATATT
  TAATTATAGG CTCCATGCCT AGCAGGAGGT GGCTAACACA AAATAAACTC AATGGTAATT
  TTCTAGAGGG TACAGTTTAA GAATAAAAGA AGAGTAAATC TCCTGATGGT TTTCAAGAGA
  R
  CTATCTCATT AGTTATTTTT CTTATTGTAG TAGGAAAACA ATTTTAAAAT TTTTATCTGT
  TGTATATATG TGTAAGATAT GCTTGGACGC ACATGTTTGT ATGTGTGCAT TTGTGTGGAC
  AGTCATGTGT GTAGATATGA ATATGCTTCT GCCATGAAAT ATATATAAAA GTCCAAGGAC
  AACACTGGCT GTCAGTGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46856710	NES10839552	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33780595					SNP	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46856710	NES10839552	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:25599296 () rs orientation: forward

Symbol	Name	Function Class
Gm55653	predicted gene, 55653	888 bp upstream
Nlgn1	neuroligin 1	within coordinates