rs33780697 SNP Detail

Summary

• ID
  rs33780697
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170471783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGGTTCA AGATGCATCC
  TCTGGGTGGG GGTATTATCA GGTTCTAGGG TTGTAGCAGA CATGAAGATT ACAATTGTTC
  GTAAGTTCAA AGCTTCCCGT ACTCCAGATG GAGTCAAGTT CCGGAAAACA AAACAAAACA
  AAACAAAAAC CAACAACAAT AAAACACTTC AAGAGAAGAG GTCGTGTTTC TCCGCTGTCC
  Y
  GGTTGCAGTC CAGGGAGCAA GTCAGGGCTC CCCCGGAGCT CGGGCGTGAA GAAAACTCGA
  GAAAAGGCAC ACGGAGTCCC TCTCGGATGA CCATTTACAA TCAGATGCAA GGCCAGCAGC
  GCCCTTCCCA CGCCAGCCGG CGCCCGCTTA AGCGCAGTGG CTGAACCCTA GAGGAGGCGG
  GGTCCCCGGG CGCAGCGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49529735	NES12826925	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33780697					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49529735	NES12826925	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170471783 () rs orientation: forward

Symbol	Name	Function Class
Cpgi995	CpG island 995	within coordinates
Olfml2b	olfactomedin-like 2B	318 bp upstream
Rr14047	regulatory region 14047	1583 bp distal
Rr28935	regulatory region 28935	within coordinates
Tssr280	transcription start site region 280	130 bp downstream
Tssr9927	transcription start site region 9927	1363 bp downstream
Tssr9928	transcription start site region 9928	235 bp upstream
Tssr9929	transcription start site region 9929	276 bp upstream
Tssr9930	transcription start site region 9930	309 bp upstream
Tssr9931	transcription start site region 9931	358 bp upstream
Tssr9932	transcription start site region 9932	375 bp upstream
Tssr9933	transcription start site region 9933	571 bp upstream
Tssr14922	transcription start site region 14922	114 bp downstream
Tssr14923	transcription start site region 14923	165 bp downstream