rs33780698 SNP Detail

Summary

• ID
  rs33780698
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170471497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGGC GTTTGATTCT GGGAAGTCAC
  Y
  AGGACAAACA GAACAGCAGA GACAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49529736	NES12826924	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	T	C	C	C	T	C	C		T	C	C	T		C
ss146140273	ENSMUSSNP6834067	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
ss320111985	CHEV_1_172574059	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33780698					SNP	C	C	C	T	T	C	C	C	T	C	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49529736	NES12826924	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170471497 () rs orientation: forward

Symbol	Name	Function Class
Cpgi995	CpG island 995	242 bp proximal
Olfml2b	olfactomedin-like 2B	604 bp upstream
Rr14047	regulatory region 14047	1297 bp distal
Rr28935	regulatory region 28935	within coordinates
Tssr280	transcription start site region 280	416 bp downstream
Tssr9927	transcription start site region 9927	1077 bp downstream
Tssr9928	transcription start site region 9928	521 bp upstream
Tssr9929	transcription start site region 9929	562 bp upstream
Tssr9930	transcription start site region 9930	595 bp upstream
Tssr9931	transcription start site region 9931	644 bp upstream
Tssr9932	transcription start site region 9932	661 bp upstream
Tssr9933	transcription start site region 9933	857 bp upstream
Tssr14922	transcription start site region 14922	400 bp downstream
Tssr14923	transcription start site region 14923	451 bp downstream