rs33780701 SNP Detail

Summary

• ID
  rs33780701
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170471432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATCGACC TGACTCTGCT
  GAGTATTTCA GAGTGGCAAT TGTCCCAGAA GACTTAATGC TCTTTCCAAA AGTGACACAT
  TGTTAATCTT CATAGTAGGC ATATTCAGGG TCACTAATTA AAGAGCCCAA AAGAGGACCG
  CACCATTACA TGTATATACC CTTTAGAGAT TATCTGGCCA GATAGAGAGG CCTGTCCATT
  Y
  GTCCCAAACC ACGGAGACTG CAAGAGACAT TCCCTGTGGT AGGCGTTTGA TTCTGGGAAG
  TCACTAGGAC AAACAGAACA GCAGAGACAG CAGAGACCTG TAGCCACTCT CCATATTTTA
  AAAATGTATC CAACTCCCTC CACATTCTGT CAGAGGTTCA AGATGCATCC TCTGGGTGGG
  GGTATTATCA GGTTCTAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49529739	NES12826919	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33780701					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49529739	NES12826919	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170471432 () rs orientation: forward

Symbol	Name	Function Class
Cpgi995	CpG island 995	307 bp proximal
Olfml2b	olfactomedin-like 2B	669 bp upstream
Rr14047	regulatory region 14047	1232 bp distal
Rr28935	regulatory region 28935	within coordinates
Tssr280	transcription start site region 280	481 bp downstream
Tssr9927	transcription start site region 9927	1012 bp downstream
Tssr9928	transcription start site region 9928	586 bp upstream
Tssr9929	transcription start site region 9929	627 bp upstream
Tssr9930	transcription start site region 9930	660 bp upstream
Tssr9931	transcription start site region 9931	709 bp upstream
Tssr9932	transcription start site region 9932	726 bp upstream
Tssr9933	transcription start site region 9933	922 bp upstream
Tssr14922	transcription start site region 14922	465 bp downstream
Tssr14923	transcription start site region 14923	516 bp downstream