rs33780878 SNP Detail

Summary

• ID
  rs33780878
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:174038570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCCTCAG TAGAAATGCA
  ATGCTCAGAT TCAAGAACAT GACGATAGTA CACACAAGAA ACTGATGATT ATGCGAAGAG
  GCTGGTAAGG AAAGTATACT AGAACAGCCT GGCTTTGAAA GAATAAAGGA GAACTTAAAT
  GCCTCTCCTG TCTCGTTTGT ACACGTGATG GGTATGAGTT TCTCCCCCAG AATTGTGTCT
  R
  AGCCACAGTT CCATTACAGA TCTAGTGAGC ATTTACTACA AGTCCAGTCT TGCAGTCTTG
  GTTGCCATAA CCCAATGAGG ATGACTTCAC TTCCCCTTTC TTTTGTTTGT TTTCCTGGAA
  TTGGAAATGG AAGGAATAGT ATAAGAATAT TGTATGTATC CCCTACAGGA AGCAAGGCAC
  TGAAAGGCCA GTAGCTCTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49530314	NES12832618	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33780878					SNP	G	G	A	G	A	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49530314	NES12832618	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:174038570 () rs orientation: forward

Symbol	Name	Function Class
Gm71183	predicted gene, 71183	within coordinates
Spta1	spectrin alpha, erythrocytic 1	within coordinates
Tssr10306	transcription start site region 10306	650 bp upstream