rs33781189 SNP Detail

Summary

• ID
  rs33781189
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107466484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCCTGCGC TGTCCTCTGT
  AGCTGTCTAG CTGTCACTAG GAGAGGTTCC TTGAGGCTGC TCTGCACTCC AGCCTAGGTC
  TGTATTAGGA CAGGCAGCTC TTCAGGGGAC TCTGTGAGCA AGGGGACTAT GGCAGATCTT
  ATGAGAGAGA CTACAGGAGC CCAGAGGGGC ACAGATGGGA GAGATCAGGG AAAAGCCAAA
  Y
  TTCTGGTGGC AATGAGCAGC TTGGTGTCTG TCCAGACCTC CATTCTCACA CCTAACCACC
  TTAGTCCTGC CCCATGCTGC TGTCCCAGAG CCCCAGAGAA GTCAGAGGCC TGCCTGCAAC
  CTGCTGGTGC AGCCCAGAAG CCTGGTCGCA GAGCCCAACA CAACTCCTAC CTTGTGACAT
  CTGGCTGTGG CCACTAGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46857267	NES10705692	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33781189					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46857267	NES10705692	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107466484 () rs orientation: forward

Symbol	Name	Function Class
Gm65374	predicted gene, 65374	within coordinates
Rr582999	regulatory region 582999	within coordinates
Rr583000	regulatory region 583000	163 bp proximal
Rr583001	regulatory region 583001	171 bp proximal
Rr583002	regulatory region 583002	487 bp proximal