rs33781475 SNP Detail

Summary

• ID
  rs33781475
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170471299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAAGGGGG ACTAGATCTT
  GGTGGCTGGC TTTAGGAATG TAATGGAACG GTTTTTAACA AGGAAGATGG GCTAGGAGAA
  GGCAAGGCCT GCCAGAGCCA TGCCTGCCAT GCTCAGCTCT GCTAGAGCCC CTCAGAATCG
  ACCTGACTCT GCTGAGTATT TCAGAGTGGC AATTGTCCCA GAAGACTTAA TGCTCTTTCC
  R
  AAAGTGACAC ATTGTTAATC TTCATAGTAG GCATATTCAG GGTCACTAAT TAAAGAGCCC
  AAAAGAGGAC CGCACCATTA CATGTATATA CCCTTTAGAG ATTATCTGGC CAGATAGAGA
  GGCCTGTCCA TTTGTCCCAA ACCACGGAGA CTGCAAGAGA CATTCCCTGT GGTAGGCGTT
  TGATTCTGGG AAGTCACTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49529743	NES12826910	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33781475					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49529743	NES12826910	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170471299 () rs orientation: forward

Symbol	Name	Function Class
Cpgi995	CpG island 995	440 bp proximal
Olfml2b	olfactomedin-like 2B	802 bp upstream
Tssr280	transcription start site region 280	614 bp downstream
Tssr9927	transcription start site region 9927	879 bp downstream
Tssr9928	transcription start site region 9928	719 bp upstream
Tssr9929	transcription start site region 9929	760 bp upstream
Tssr9930	transcription start site region 9930	793 bp upstream
Tssr9931	transcription start site region 9931	842 bp upstream
Tssr9932	transcription start site region 9932	859 bp upstream
Tssr9933	transcription start site region 9933	1055 bp upstream
Tssr14922	transcription start site region 14922	598 bp downstream
Tssr14923	transcription start site region 14923	649 bp downstream