rs33781477 SNP Detail

Summary

• ID
  rs33781477
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170470751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCCTATCA AGAAATGATA ATATTAGTAA
  TACTAAATGG TAACATTACA CTTCTATCAA CTATCATATC TAAGCTGGAG TCTGCTTTTG
  CTTGATTTAT TACTTTCATT ATCCCAACCT CTTTGCTTAG CATTAGGAAC AAAGTATTCA
  K
  ATTTCTCTAG GGGGTAGAAT ATCTTTTAGG TCTTTGCATT tgaagggatt gatatgcatc
  cagcacaaga catcccaaga ccaagttctc agcccaaagg agatttattt gcccccaagg
  aacaaagggc agggaataca agtcaggtga                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49529745	NES12826999	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		G	G	T	G		G
ss320111972	CHEV_1_172573313	CHEVERUD	SCREENING_POP	f	SNP											G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33781477					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49529745	NES12826999	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170470751 () rs orientation: forward

Symbol	Name	Function Class
Cpgi995	CpG island 995	988 bp proximal
Olfml2b	olfactomedin-like 2B	1350 bp upstream
Rr14047	regulatory region 14047	551 bp distal
Rr28935	regulatory region 28935	649 bp proximal
Tssr280	transcription start site region 280	1162 bp downstream
Tssr9927	transcription start site region 9927	331 bp downstream
Tssr9928	transcription start site region 9928	1267 bp upstream
Tssr9929	transcription start site region 9929	1308 bp upstream
Tssr9930	transcription start site region 9930	1341 bp upstream
Tssr9931	transcription start site region 9931	1390 bp upstream
Tssr9932	transcription start site region 9932	1407 bp upstream
Tssr9933	transcription start site region 9933	1603 bp upstream
Tssr14922	transcription start site region 14922	1146 bp downstream
Tssr14923	transcription start site region 14923	1197 bp downstream