rs33781478 SNP Detail

Summary

• ID
  rs33781478
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170470733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATTAGGT TCAAGGGAGT
  GGCTCGGTGT CAGAAAGCTT GTCTAGGATC CTGGAGTCTC TGAGTTGTAT CCCTATCAAG
  AAATGATAAT ATTAGTAATA CTAAATGGTA ACATTACACT TCTATCAACT ATCATATCTA
  AGCTGGAGTC TGCTTTTGCT TGATTTATTA CTTTCATTAT CCCAACCTCT TTGCTTAGCA
  Y
  TAGGAACAAA GTATTCAGAT TTCTCTAGGG GGTAGAATAT CTTTTAGGTC TTTGCATTTG
  AAGGGATTGA TATGCATCCA GCACAAGACA TCCCAAGACC AAGTTCTCAG CCCAAAGGAG
  ATTTATTTGC CCCCAAGGAA CAAAGGGCAG GGAATACAAG TCAGGTGATA GAGAATGAAG
  GAGAAGGGGA AAGGAACACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49529746	NES12826998	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33781478					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49529746	NES12826998	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170470733 () rs orientation: forward

Symbol	Name	Function Class
Cpgi995	CpG island 995	1006 bp proximal
Olfml2b	olfactomedin-like 2B	1368 bp upstream
Rr14047	regulatory region 14047	533 bp distal
Rr28935	regulatory region 28935	667 bp proximal
Tssr280	transcription start site region 280	1180 bp downstream
Tssr9927	transcription start site region 9927	313 bp downstream
Tssr9928	transcription start site region 9928	1285 bp upstream
Tssr9929	transcription start site region 9929	1326 bp upstream
Tssr9930	transcription start site region 9930	1359 bp upstream
Tssr9931	transcription start site region 9931	1408 bp upstream
Tssr9932	transcription start site region 9932	1425 bp upstream
Tssr9933	transcription start site region 9933	1621 bp upstream
Tssr14922	transcription start site region 14922	1164 bp downstream
Tssr14923	transcription start site region 14923	1215 bp downstream