rs33781480 SNP Detail

Summary

• ID
  rs33781480
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170470688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCCACAA ACTTTTCTCT
  TTTTAAGAAA ATAGTAATTA TTGTTATTAT TAGGTTCAAG GGAGTGGCTC GGTGTCAGAA
  AGCTTGTCTA GGATCCTGGA GTCTCTGAGT TGTATCCCTA TCAAGAAATG ATAATATTAG
  TAATACTAAA TGGTAACATT ACACTTCTAT CAACTATCAT ATCTAAGCTG GAGTCTGCTT
  Y
  TGCTTGATTT ATTACTTTCA TTATCCCAAC CTCTTTGCTT AGCATTAGGA ACAAAGTATT
  CAGATTTCTC TAGGGGGTAG AATATCTTTT AGGTCTTTGC ATTTGAAGGG ATTGATATGC
  ATCCAGCACA AGACATCCCA AGACCAAGTT CTCAGCCCAA AGGAGATTTA TTTGCCCCCA
  AGGAACAAAG GGCAGGGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49529748	NES12826996	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C		T	T	C	T		T
ss320111970	CHEV_1_172573250	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33781480					SNP	T	T	T	T	T	T	T	T	C	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49529748	NES12826996	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170470688 () rs orientation: forward

Symbol	Name	Function Class
Cpgi995	CpG island 995	1051 bp proximal
Olfml2b	olfactomedin-like 2B	1413 bp upstream
Tssr280	transcription start site region 280	1225 bp downstream
Tssr9927	transcription start site region 9927	268 bp downstream
Tssr9928	transcription start site region 9928	1330 bp upstream
Tssr9929	transcription start site region 9929	1371 bp upstream
Tssr9930	transcription start site region 9930	1404 bp upstream
Tssr9931	transcription start site region 9931	1453 bp upstream
Tssr9932	transcription start site region 9932	1470 bp upstream
Tssr9933	transcription start site region 9933	1666 bp upstream
Tssr14922	transcription start site region 14922	1209 bp downstream
Tssr14923	transcription start site region 14923	1260 bp downstream