rs33781624 SNP Detail

Summary

• ID
  rs33781624
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28394676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCTTCAG ACAAATGGTT
  TCTGTGTAAT GGAGAGGAAA CGAACCGAAT ACCATCTGCA AGGAAGAGCT ATCTGCCCAT
  ATGGTAAAGG GTGGTGGCGC TGAGCAGACA TCCAGGTCAC TCGGAATTCT AGTATTTTCA
  ACTCACCAGA AAACTAAAAG TGATCCTGAA CTTTTTCATT GAGTATGTGT GTGCATTTGT
  R
  AGTGTATATA AGCAAGCACT GTCTGTGTGT GTGTGTGTGT AAGCATGCTA CCATGTGTCT
  TTGGAGTTCA GAGGACAACT GGGGGAAACA GGTTCTCTTT TCCCACCATA TGGGTTCCAA
  GGATCAAACT CTTGCCAGCC CTGATGGTGA ACTCTTGACC CTCCTGGTTT CACCTCCCCA
  GTGCAGGGGA TTACAGTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	PWD/PhJ
ss48357480	NES12230624	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	PWD/PhJ
rs33781624					SNP	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48357480	NES12230624	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28394676 () rs orientation: forward

Symbol	Name	Function Class
C230013L11Rik	RIKEN cDNA C230013L11 gene	within coordinates
Cpgi8870	CpG island 8870	849 bp proximal
Rr339474	regulatory region 339474	324 bp proximal
Scube3	signal peptide, CUB domain, EGF-like 3	848 bp downstream
Tssr143392	transcription start site region 143392	1428 bp upstream
Tssr143393	transcription start site region 143393	1694 bp upstream
Tssr147097	transcription start site region 147097	1939 bp downstream
Zfp523	zinc finger protein 523	1460 bp upstream