rs33781625 SNP Detail

Summary

• ID
  rs33781625
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28394578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGGCAGG CAGATGTGTG
  AGTTTGAGGC CAGCCTGGTC TACCTAGACT AAGATGCAGG CCAGCCAAGG CCACGTGGTG
  GGATGACAAC TTTTATCTCT TCCTTCAGAC AAATGGTTTC TGTGTAATGG AGAGGAAACG
  AACCGAATAC CATCTGCAAG GAAGAGCTAT CTGCCCATAT GGTAAAGGGT GGTGGCGCTG
  R
  GCAGACATCC AGGTCACTCG GAATTCTAGT ATTTTCAACT CACCAGAAAA CTAAAAGTGA
  TCCTGAACTT TTTCATTGAG TATGTGTGTG CATTTGTGAG TGTATATAAG CAAGCACTGT
  CTGTGTGTGT GTGTGTGTAA GCATGCTACC ATGTGTCTTT GGAGTTCAGA GGACAACTGG
  GGGAAACAGG TTCTCTTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss48357481	NES12230623	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs33781625					SNP	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48357481	NES12230623	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28394578 () rs orientation: forward

Symbol	Name	Function Class
C230013L11Rik	RIKEN cDNA C230013L11 gene	within coordinates
Cpgi8870	CpG island 8870	947 bp proximal
Rr339474	regulatory region 339474	422 bp proximal
Scube3	signal peptide, CUB domain, EGF-like 3	750 bp downstream
Tssr143392	transcription start site region 143392	1526 bp upstream
Tssr143393	transcription start site region 143393	1792 bp upstream
Zfp523	zinc finger protein 523	1558 bp upstream