rs33781627 SNP Detail

Summary

• ID
  rs33781627
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28394323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCACCAAG GTCACCGCAC
  CCCAGCAATG GAGAGCTGTC ATCCGACATC CCCCCCTCTG ATCTTTACTC GTAGCTCAGC
  AGCAGAGCGC CATGCCTAGC ATGCCCGGGC CCTTGCATCT CATTCCTGGT ACCAAGAGAA
  TAAAATTCTA CTCCACAACA GCTTCCTCAC CAATCTTTCG GACCTGGAAT GTTTTAGAAC
  Y
  GTTGCTTTGG CTGGGTATAG TGACTCACGC CTTTGATCCT AGCACTTGGG GAGGGAGAGG
  CAGGCAGATG TGTGAGTTTG AGGCCAGCCT GGTCTACCTA GACTAAGATG CAGGCCAGCC
  AAGGCCACGT GGTGGGATGA CAACTTTTAT CTCTTCCTTC AGACAAATGG TTTCTGTGTA
  ATGGAGAGGA AACGAACCGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss48357483	NES12230621	PERLEGEN	MM_PANEL2	f	SNP	T	C	T		T	T		C
ss325352113	CHEV_17_28312294	CHEVERUD	SCREENING_POP	f	SNP				T			C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs33781627					SNP	T	C	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48357483	NES12230621	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28394323 () rs orientation: forward

Symbol	Name	Function Class
C230013L11Rik	RIKEN cDNA C230013L11 gene	within coordinates
Cpgi8870	CpG island 8870	1202 bp proximal
Rr339474	regulatory region 339474	677 bp proximal
Scube3	signal peptide, CUB domain, EGF-like 3	495 bp downstream
Tssr143392	transcription start site region 143392	1781 bp upstream
Zfp523	zinc finger protein 523	1813 bp upstream