rs33781833 SNP Detail

Summary

• ID
  rs33781833
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107575933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGAGGTGT TTGCTAACCA
  TTAAAGAGCT CGCACACACT GTAGAAAGAT GTGTACAGAA ATGCTTGAGC TCAATTATTT
  GGCCTTAAGA TTGACTAATA TGAAAAATCA CCATGGTAAA AAGCTCTTTT GGAAAATGCT
  AAAAGTTCTG AGAACGCACT CTAAGGCTAA CACTGAGCAC AGGTCTTACC TTCTGAGATT
  Y
  AACCTGAGAG TTAGCACTGT TCTCCATGCA GCAAAGCACT GATACTCACC TGTGCAAGTA
  ATTACAACGT CCACCTGCCG GATGACTTCA TTCAGCTTCA CCACCCTGAA CCCATCCATG
  CTGGAAGAAA AGAAAGCAAC ACTATAAGCA AAGCAAAGTG TGCTGTGTGG CTCACGTTGA
  CAAAGCTAGA CAACAAAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46858182	NES10701276	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33781833					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46858182	NES10701276	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107575933 () rs orientation: forward

Symbol	Name	Function Class
Ahcyl1	S-adenosylhomocysteine hydrolase-like 1	within coordinates
Tssr35075	transcription start site region 35075	911 bp upstream
Tssr35076	transcription start site region 35076	1954 bp downstream