rs33782005 SNP Detail

Summary

• ID
  rs33782005
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107466949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACAGGAC TGGACCTCGG
  GTACAGAGCT TTATCCTGAC ATGAACCCCA CCTCTCACAG ACTGTCCAGC CCTTGTCAGT
  CACGGCTGGG GTATAGACAC AAGGGCCCAC ACTGAATAGG GTTCTGGGCC AGGAAGAAGA
  GGTCAGCCAG GCACATATTT TGAGGGAACA CATAAGTCTG ACTCTTCAGG ACCTAAATTA
  Y
  CGCCAGGGAA AGGAAGCTGC TACTAACAGC AGAGGGTGTA GGGTGTGCAA ATCAGATGAC
  TTTTTTGAAA GAGGCCTCGG AAAGAGCTGA AGAAGTCAAA GAGGCAACAA GAACATCCCG
  GCTGAGAGCC CAACCTGGAC AAGGCCGTGT TGAAGAGTGT GGAACCTGAA TGGCTGAAAT
  GAATGCTTCC CTACCTCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46857273	NES10705699	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33782005					SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46857273	NES10705699	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107466949 () rs orientation: forward

Symbol	Name	Function Class
Gm65374	predicted gene, 65374	279 bp upstream
Rr582999	regulatory region 582999	303 bp distal
Rr583000	regulatory region 583000	within coordinates
Rr583001	regulatory region 583001	257 bp distal
Rr583002	regulatory region 583002	22 bp proximal