rs33782090 SNP Detail

Summary

• ID
  rs33782090
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107456351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCATCTG TAATGGGATC
  TGATGCCCTC TTCTGGTGTG TCTGAAGAGA GCAATGGTGG TATACTCATA TGCATAAGAT
  AAATAAATCT TTAAACATCA TTTTTTAAAT TTAAATGTAT TTATAACGTC TCTGCTACCT
  AGTAACAACT TGTCCTTAGC ATCTTCACAT TGTCTATCCC AGCCTGTTCT CAATGTCTCC
  K
  AGTAACCTGT GAGAACACCA GCTTCTGACA GGCTGGGGAA TCAGCAACTC ATGTCTGTGA
  CTTTGGGTCA GCGTAAGACT TGAGCCAAGA AGGCATCTCA GAGTTCAAGC CCAGGCCCTT
  CTCCTTCTAT TTTGCAAGGG AAGAAATCTC TGGTCCAGAA CTACAAACAG ACTTGCCCTA
  AGGAAGCTCA AAGCAAATAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46857078	NES10706102	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33782090					SNP	T	T	T	T	T	T	G	T	T	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46857078	NES10706102	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107456351 () rs orientation: forward

Symbol	Name	Function Class
Gm36097	predicted gene, 36097	within coordinates
Rr582996	regulatory region 582996	1526 bp distal
Rr582997	regulatory region 582997	1477 bp proximal
Rr582998	regulatory region 582998	1556 bp proximal