rs33782437 SNP Detail

Summary

• ID
  rs33782437
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:28447002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAC AACCCTCACC TCTCCCATTC
  Y
  GACTCACATT TTCCCTTTCT CCCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48357393	NES12228134	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C		C	C	C	C		C
ss145422855	ENSMUSSNP4428193	ENSEMBL	ENSEMBL_Sanger	f	SNP								C
ss325352389	CHEV_17_28364973	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33782437					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48357393	NES12228134	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28447002 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8873	CpG island 8873	1578 bp distal
Def6	differentially expressed in FDCP 6	Intron
Rr392476	regulatory region 392476	1741 bp upstream
Rr405130	regulatory region 405130	1664 bp downstream
Rr524470	regulatory region 524470	1808 bp distal
Rr524471	regulatory region 524471	1739 bp distal
Tssr143400	transcription start site region 143400	957 bp downstream