rs33782440 SNP Detail

Summary

• ID
  rs33782440
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28445537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCAAGCT ACCTGTCTGC
  CAACTCGCAT TATCATCAGC TGGCTGTGCC ATCGCCTACA GATTGCCTAA CCTCTCTGTC
  TGAAGTCTCT TATCTGTGAG AGGAAGCAGA TACCACGTTA CCACTACAGA ACAAGCTTAG
  TTTAAGCATG GTATTTAGTA TGTAAATGCT GAACACACCT GTGGCTGTGT TTGCCAATAG
  W
  ATTATTAACC TGGGCAGGAT TCCCCACCTC CTAGCCTCCA AAACACTCCC CGGAGCTTGA
  ATGCCTGTAG AAAAGGTTCT AGGTTGTTGT TGTTGTTGTT TTGGTTTTAG ATTTGTTTCT
  TTTTTAATCT CTTTTAAAAC TTATTAAAAT GTATGTGTAT GTGTGCTTTG TCTGCATGAA
  TGTCTGTGTA CTACGTGTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48357396	NES12228187	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	A	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33782440					SNP	T	T	T	T	T	T	A	T	T	A	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48357396	NES12228187	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28445537 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8873	CpG island 8873	113 bp distal
Def6	differentially expressed in FDCP 6	within coordinates
Rr405130	regulatory region 405130	199 bp downstream
Rr524469	regulatory region 524469	1931 bp distal
Rr524470	regulatory region 524470	343 bp distal
Rr524471	regulatory region 524471	274 bp distal
Tssr143400	transcription start site region 143400	504 bp upstream