rs33782443 SNP Detail

Summary

• ID
  rs33782443
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:28444641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGGGATT ACCTTCGTTT
  AATATGCTGG TTTATTGTAA TATAACGTAT TATGATGTTT AATTACATGT AATTATAACC
  GGTGTTGTTT TGTGTGAGGC TGGATAGCAA ACATACAGCC ATGGGCACAT CAGGTGAGCC
  CTCTGCTGCT GAGCTACAGC CCCAGCAAGC GTCTAATTAT TCTTTCTAAG GTCAGTGCAA
  R
  AACAATAGGA GGATTCAGGG TCTTAAACAG GTCAGATCAG GAAACCCCAA CTAAAGACCC
  TCCATACACA GAGCCAGGAA GAGTTAGGGT TGGGGGGTTG GGGAGTTGGC TGGGGAGGGG
  GCAGTAGCCT GTCTTTCTCC TCCGGTGTCC CACTGATTCG CTCTTTGCTC CCCACAGGCC
  CGGGCCTCTA TGCAGGCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48357399	NES12228207	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33782443					SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48357399	NES12228207	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28444641 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8872	CpG island 8872	1395 bp distal
Cpgi8873	CpG island 8873	123 bp proximal
Def6	differentially expressed in FDCP 6	Intron
Gm49874	predicted gene, 49874	1500 bp upstream
Rr405129	regulatory region 405129	1248 bp downstream
Rr405130	regulatory region 405130	397 bp upstream
Rr524469	regulatory region 524469	1035 bp distal
Rr524470	regulatory region 524470	532 bp proximal
Rr524471	regulatory region 524471	601 bp proximal
Tssr143400	transcription start site region 143400	1400 bp upstream
Tssr147100	transcription start site region 147100	1500 bp upstream