rs33782596 SNP Detail

Summary

• ID
  rs33782596
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107576172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGATACTCA CCTGTGCAAG
  TAATTACAAC GTCCACCTGC CGGATGACTT CATTCAGCTT CACCACCCTG AACCCATCCA
  TGCTGGAAGA AAAGAAAGCA ACACTATAAG CAAAGCAAAG TGTGCTGTGT GGCTCACGTT
  GACAAAGCTA GACAACAAAA TCCCCTTCTG AAGTAAAAGC TAATGCTCCA TCCCAGAAAT
  R
  GTAAATGATG AGCTATAGTG AACTACAGAC TGGCTTCTGC CGGGCCCCAC GAGTCTACAC
  AGCAAGAGAA AATGCCAAGA GGCCCCATAA ATGGCTTCGA GTGAAGGGAA CAAAGCACCT
  TACTCTTCCC CGGGAGACTT CTCCACAAAC AGTAAAGTGA GTCATCAGCC ACCGGCTCTC
  AGAAATACAA GGCGTGGACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46858185	NES10701278	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A	A	A	A		G	A	G	G		A
ss320865837	CHEV_3_107471774	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33782596					SNP	A	A	A	G	A	A	A	A	A	A	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46858185	NES10701278	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107576172 () rs orientation: forward

Symbol	Name	Function Class
Ahcyl1	S-adenosylhomocysteine hydrolase-like 1	within coordinates
Tssr35075	transcription start site region 35075	1150 bp upstream
Tssr35076	transcription start site region 35076	1715 bp downstream