rs33782910 SNP Detail

Summary

• ID
  rs33782910
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107467589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTAAGGTC TGACAGTGGG
  TCGGTGGCCA GGGAATAGAT AGCCTGGCTA AACCCAGGCT GAGTTCCCAA GCTCGCTGGC
  TACCTGGTAG GATGGCTGCT GTCCATCAGA TGTCAGGCTC AGCTGGGATG GGAACATCTA
  CAGTCGTAAC CTTGGGGTTA GCAAGCTGAG TGGGAGAGGC AGACAAGGCA ACCCTGAGTT
  S
  CTTCCCTGCT GGTTTATACC CAGGTGAGAA GGCTGAGTGT CTCTCCAGGC CAGATGCCTC
  TGGGTCTGGA CTGAGTTTGT GTGATGAACA TGGGGTTTCC AGACCTGAGA CCCCACTCCC
  TACTTCCTGC TGGGTCAAGG CTAGGTTCTT GGCTTGACCG GGAGCCAGTA GCTCATGAAT
  GATAGAAATC CCAGGGTCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46857288	NES10705710	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	C	G	G	G	C		G	C	C	C
ss135585287	ENSMUSSNP2155914	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33782910					SNP	G	G	G	G	G	G	G	C	G	G	G	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46857288	NES10705710	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107467589 () rs orientation: forward

Symbol	Name	Function Class
Gm65374	predicted gene, 65374	919 bp upstream
Rr582999	regulatory region 582999	943 bp distal
Rr583000	regulatory region 583000	613 bp distal
Rr583001	regulatory region 583001	897 bp distal
Rr583002	regulatory region 583002	597 bp distal