rs33782913 SNP Detail

Summary

• ID
  rs33782913
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107467831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCAGGCC AGATGCCTCT
  GGGTCTGGAC TGAGTTTGTG TGATGAACAT GGGGTTTCCA GACCTGAGAC CCCACTCCCT
  ACTTCCTGCT GGGTCAAGGC TAGGTTCTTG GCTTGACCGG GAGCCAGTAG CTCATGAATG
  ATAGAAATCC CAGGGTCTGG ATGCTCCAGG TGACAGAATC TCCTGATCTG TCCCAAACCA
  Y
  TATGTATCCT CCCACTTGAC ACCCTCTCCC AATCTCCCTG CAAGGGCAGC AGGAGTGAAC
  ACAACATTCA GGGCTACAAC TAGGGGGCCA TTTCTGATAA CGGTGCTAAG AGTGCTGAGT
  TCTCTCAGCA ATAAAGAGAG CCAACCTTCA TCCATGAAGA TGCTGAGTTA GCAAGGAACG
  GGGAGATAGA TGAGATAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46857291	NES10705712	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33782913					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46857291	NES10705712	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107467831 () rs orientation: forward

Symbol	Name	Function Class
Gm65374	predicted gene, 65374	1161 bp upstream
Rr582999	regulatory region 582999	1185 bp distal
Rr583000	regulatory region 583000	855 bp distal
Rr583001	regulatory region 583001	1139 bp distal
Rr583002	regulatory region 583002	839 bp distal