rs33783106 SNP Detail

Summary

• ID
  rs33783106
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107456720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACTTGCCC TAAGGAAGCT
  CAAAGCAAAT AGTAAAGCAG ACATGGGCCT AGAGCCTGTG CCCGCCCTGG GCTTTCTATT
  TCAGCCAATA GCTATCGGGT CGTACCTAGC TGGGGCTGGT CTGAGCATTG TGCTTCACAC
  TGAGATTCTG TTCATTACAA GCAAGTTACT TCTGAGGGTG AGGGTTGCAT TGCCAATAGG
  W
  AGAGATGCCT CCACACAACC TCGCCATGGC AGTGAGGGCT GTGTCCTTAT GGATTTGTTT
  ACTATTACTC TCTGCTTTTT GCTAAATCAG TCCTGAGGTG AAGACCTTAA CTGAGCCTTT
  CTGGATGTCC ATGTGCAGTT TTTCTCCCGC TGCCCCCGAA GTGTGAAGAC TTCAACAGCT
  TTAGAACTCC ATTCAGACGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46857084	NES10706057	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33783106					SNP	A	A	A	A	A	A	T	A	A	A	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46857084	NES10706057	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107456720 () rs orientation: forward

Symbol	Name	Function Class
Gm36097	predicted gene, 36097	within coordinates
Rr582996	regulatory region 582996	1895 bp distal
Rr582997	regulatory region 582997	1108 bp proximal
Rr582998	regulatory region 582998	1187 bp proximal