rs33783116 SNP Detail

Summary

• ID
  rs33783116
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28443629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAGGTTA GGGCTAGGGA
  AAACCCCTGG TAGAATGAGA CCTGGTTCAG AATTCTTTTC TGGAGGCAGG ACTTGGGCCG
  AGGAAGCTGC TTAAGGCTTC TTGATTGCAA ATAATTTGGA ATGAAATCAA TCTAGACTTG
  AACTAAATTT TAACAAAACC AGTTTGGGGA CCATAAGACG GGATGCATGT GAAGGGCAGA
  R
  TAGATGCACA GAAGCAATTG ACTTTAAATT TTAAATTGAG AAAACGCAAT TCTAGAGCTG
  GCTCAAAGGA TAAAGGTGCT TGCCACACAT ACCTAGCGTC CTGAATTCCG TTCCTGGAAC
  CCCAGAAAGA TGGGCAGAGG GAACCGGCTC CACAACGTTG TCCTCTGACC GCCACAGGCA
  TGCTGTGGCA TGTGTGCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48357402	NES12228277	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33783116					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48357402	NES12228277	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28443629 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8872	CpG island 8872	383 bp distal
Cpgi8873	CpG island 8873	1135 bp proximal
Def6	differentially expressed in FDCP 6	within coordinates
Gm49874	predicted gene, 49874	488 bp upstream
Rr405129	regulatory region 405129	236 bp downstream
Rr405130	regulatory region 405130	1409 bp upstream
Rr524469	regulatory region 524469	23 bp distal
Rr524470	regulatory region 524470	1544 bp proximal
Rr524471	regulatory region 524471	1613 bp proximal
Tssr147100	transcription start site region 147100	488 bp upstream