rs33783117 SNP Detail

Summary

• ID
  rs33783117
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:28443572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTTCAGAAT TCTTTTCTGG AGGCAGGACT TGGGCCGAGG
  AAGCTGCTTA AGGCTTCTTG ATTGCAAATA ATTTGGAATG AAATCAATCT AGACTTGAAC
  Y
  AAATTTTAAC AAAACCAGTT TGGGGACCAT AAGACGGGAT GCATGTGAAG GGCAGAGTAG
  ATGCACAGAA GCAATTGACT TTAAATTTTA AATTGAGAAA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48357403	NES12228276	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33783117					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48357403	NES12228276	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28443572 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8872	CpG island 8872	326 bp distal
Cpgi8873	CpG island 8873	1192 bp proximal
Def6	differentially expressed in FDCP 6	Intron
Gm49874	predicted gene, 49874	431 bp upstream
Rr405129	regulatory region 405129	179 bp downstream
Rr405130	regulatory region 405130	1466 bp upstream
Rr524469	regulatory region 524469	within coordinates
Rr524470	regulatory region 524470	1601 bp proximal
Rr524471	regulatory region 524471	1670 bp proximal
Tssr147100	transcription start site region 147100	431 bp upstream