rs33783385 SNP Detail

Summary

• ID
  rs33783385
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107576661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGGCCTT GAGAGCAGCA
  CAGCAGCCCT TTCCTACCTG CAGAATATAG GAAAGCCCAA GTTGCCAGAT CTAAGAAGAT
  ACGATCATTG GGGGAGACAA GCTTTTGAGG AGATAGGAAT TAGCCTCTTT AAATCAGCAT
  CATCCAGTGA ACACTCCAGT CCCAGCTGGA GCAGAAAGAA ACCCAAACTA GGCTGTAAAC
  Y
  TCAATTAGAG ATAATTTAGC AGACAAGTCA CAACAAGAGG TGGGGAGAGG GAGGCTCTGC
  GTAATTGTTA CCATTATGAA AACAAGTTCA AACAAGAACA AATGATTTAT TCCATAAAAA
  CCTGGCAAAA CTCACTTCCA ATGTGTCTAC TGAATACCTA GCAGCCCAAG GACTTCAGTG
  GACCACTGCT GAAGACAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46858194	NES10701281	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33783385					SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46858194	NES10701281	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107576661 () rs orientation: forward

Symbol	Name	Function Class
Ahcyl1	S-adenosylhomocysteine hydrolase-like 1	within coordinates
Tssr35075	transcription start site region 35075	1639 bp upstream
Tssr35076	transcription start site region 35076	1226 bp downstream