rs33784407 SNP Detail

Summary

• ID
  rs33784407
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:107664880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGT GTTTCCCTGC TGGCATCTGT
  Y
  TATCTGAGAC CCATCAGGCC CTTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	DBA/2J	LG/J	SM/J
ss46858845	NES10697159	PERLEGEN	MM_PANEL2	f	SNP	C	T
ss320865929	CHEV_3_107560482	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	DBA/2J	LG/J	SM/J
rs33784407					SNP	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46858845	NES10697159	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107664880 () rs orientation: forward

Symbol	Name	Function Class
Csf1	colony stimulating factor 1 (macrophage)	Intron
D3Mit104	DNA segment, Chr 3, Massachusetts Institute of Technology 104	1871 bp proximal
D3Mit104.2	DNA segment, Chr 3, Massachusetts Institute of Technology 104.2	1958 bp proximal
D3Mit104.3	DNA segment, Chr 3, Massachusetts Institute of Technology 104.3	1784 bp proximal
Gm40121	predicted gene, 40121	within coordinates
Rr583041	regulatory region 583041	17 bp proximal
Rr583042	regulatory region 583042	1026 bp proximal