rs33784410 SNP Detail

Summary

• ID
  rs33784410
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:107666233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGT ACAGTCTGCA GACAGAGACC
  Y
  GGCCTGACTG CCTGGCTGAA CCTCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	DBA/2J	LG/J	SM/J
ss46858848	NES10697096	PERLEGEN	MM_PANEL2	f	SNP	T	C
ss320865931	CHEV_3_107561835	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	DBA/2J	LG/J	SM/J
rs33784410					SNP	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46858848	NES10697096	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107666233 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13681	CpG island 13681	874 bp proximal
Csf1	colony stimulating factor 1 (macrophage)	Intron
D3Mit104	DNA segment, Chr 3, Massachusetts Institute of Technology 104	518 bp proximal
D3Mit104.1	DNA segment, Chr 3, Massachusetts Institute of Technology 104.1	1454 bp proximal
D3Mit104.2	DNA segment, Chr 3, Massachusetts Institute of Technology 104.2	605 bp proximal
D3Mit104.3	DNA segment, Chr 3, Massachusetts Institute of Technology 104.3	431 bp proximal
Gm40121	predicted gene, 40121	within coordinates
Rr583041	regulatory region 583041	749 bp distal
Rr583042	regulatory region 583042	within coordinates
Rr583043	regulatory region 583043	1309 bp proximal
Tssr1014	transcription start site region 1014	1255 bp downstream
Tssr1015	transcription start site region 1015	1341 bp downstream
Tssr35085	transcription start site region 35085	1270 bp downstream
Tssr35086	transcription start site region 35086	1317 bp downstream