rs33784594 SNP Detail

Summary

• ID
  rs33784594
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25115845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGACGGCGTG CAGCGGCGGC
  TGGTGGGCGA GATCGTGCGT CGCTTTGAGA GGAAGGGCTT CAAGCTGGTG GCACTGAAGC
  TAGTGCAGGT GTGGGCGCAC AAAGGAGCAG GTGGATCCGG GAAGGGAATC GGGACGGTCT
  AGGGTTGGGG CCCTGGTATA GGTCGCTACT CCTCCCCGTA GGCCTCCGAA GAGCTACTGC
  R
  GGAGCATTAT GTCGAGCTGC GCGAGAAACC CTTCTACAGC CGACTGGTTA AATACATGAG
  TTCTGGCCCC GTGGTGGCCA TGGTAAGTTT CCGATGACCT GCAAGGGGAG AGCAAGGCCT
  TGGGAGCTCT CATCTTGCTG ACAGTAGCCC CTACAGGTGT GGCAAGGGCT GGATGTCGTG
  CATGCTTCGC GAGCCCTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48357342	NES12239569	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33784594					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48357342	NES12239569	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25115845 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8748	CpG island 8748	within coordinates
Eme2	essential meiotic structure-specific endonuclease subunit 2	1784 bp upstream
Mapk8ip3	mitogen-activated protein kinase 8 interacting protein 3	635 bp downstream
Mrps34	mitochondrial ribosomal protein S34	582 bp downstream
Nme3	NME/NM23 nucleoside diphosphate kinase 3	within coordinates
Rr339337	regulatory region 339337	within coordinates
Tssr143113	transcription start site region 143113	1704 bp downstream
Tssr143114	transcription start site region 143114	1329 bp downstream
Tssr143115	transcription start site region 143115	341 bp downstream
Tssr143116	transcription start site region 143116	322 bp downstream
Tssr143117	transcription start site region 143117	243 bp downstream
Tssr146794	transcription start site region 146794	1794 bp upstream
Tssr146795	transcription start site region 146795	1386 bp upstream