rs33784596 SNP Detail

Summary

• ID
  rs33784596
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25114080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGGCTTGC GTGCCGACCT
  CCCTAGCGGG GACACCTTCA CCGTCTGAGT CGGAAATCTC CCAGGTTTGA GGTCGCCGAT
  GGCCGAGACG CAGGCCCCGA CCGAGACGCG AGACCGTGAC TCTCCCGGGA CCAACCTCCG
  CCATAAGTCC TTCGTTCCTG AAGCTTCCGG ACGTACCCGG ATGCTTTTGT TCAGGACACC
  S
  GCCGCTTCCG GAACGGGAGA GCTCCTGAAG CGCAGATTTC CTGTGGAGTA AGGACACTGA
  CATGGCGCGG AAGAAAGTAA GACCCCGGCT GATCGCTGAG CTGGCTCGCC GCGTGCGCGC
  CTTGCGCGAG CAGCGGAACC AGCCGCGAGA TTCGCAGCTC TACGCCCTAG ACTACGAGAC
  GCTGACCCGG CCGCACTCCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48357347	NES12239564	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33784596					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48357347	NES12239564	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25114080 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8748	CpG island 8748	within coordinates
Eme2	essential meiotic structure-specific endonuclease subunit 2	19 bp upstream
Mrps34	mitochondrial ribosomal protein S34	14 bp upstream
Nme3	NME/NM23 nucleoside diphosphate kinase 3	1394 bp upstream
Rr339337	regulatory region 339337	within coordinates
Tssr143113	transcription start site region 143113	11 bp upstream
Tssr143114	transcription start site region 143114	413 bp upstream
Tssr143115	transcription start site region 143115	1382 bp upstream
Tssr143116	transcription start site region 143116	1429 bp upstream
Tssr143117	transcription start site region 143117	1503 bp upstream
Tssr146794	transcription start site region 146794	29 bp upstream
Tssr146795	transcription start site region 146795	354 bp downstream