rs33784597 SNP Detail

Summary

• ID
  rs33784597
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25114007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACCACCAG TCGCCCCAGA
  ACCTGATCTG CCCGTAAAGC CTTGGCTGCA GCTCTGCGCT CTCCTGCTGG ACTCGGGGCT
  TGCGTGCCGA CCTCCCTAGC GGGGACACCT TCACCGTCTG AGTCGGAAAT CTCCCAGGTT
  TGAGGTCGCC GATGGCCGAG ACGCAGGCCC CGACCGAGAC GCGAGACCGT GACTCTCCCG
  K
  GACCAACCTC CGCCATAAGT CCTTCGTTCC TGAAGCTTCC GGACGTACCC GGATGCTTTT
  GTTCAGGACA CCGGCCGCTT CCGGAACGGG AGAGCTCCTG AAGCGCAGAT TTCCTGTGGA
  GTAAGGACAC TGACATGGCG CGGAAGAAAG TAAGACCCCG GCTGATCGCT GAGCTGGCTC
  GCCGCGTGCG CGCCTTGCGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48357348	NES12239563	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33784597					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48357348	NES12239563	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25114007 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8748	CpG island 8748	within coordinates
Eme2	essential meiotic structure-specific endonuclease subunit 2	within coordinates
Mrps34	mitochondrial ribosomal protein S34	87 bp upstream
Nme3	NME/NM23 nucleoside diphosphate kinase 3	1467 bp upstream
Rr339337	regulatory region 339337	within coordinates
Tssr143113	transcription start site region 143113	84 bp upstream
Tssr143114	transcription start site region 143114	486 bp upstream
Tssr143115	transcription start site region 143115	1455 bp upstream
Tssr143116	transcription start site region 143116	1502 bp upstream
Tssr143117	transcription start site region 143117	1576 bp upstream
Tssr146794	transcription start site region 146794	14 bp downstream
Tssr146795	transcription start site region 146795	427 bp downstream