rs33785239 SNP Detail

Summary

• ID
  rs33785239
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107613602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAATGAAG AGAATCCTCC
  ATATTTCGAC AAGCCCCAGA AGACAATCCA GACTTCAACC TTAATGAGCA GTGTTCCCAC
  ACCCACTCAT CATGCATTCC CCTGCCCCAG TGGCCAGCCA CTGAGAAATC TTCCTTTCAG
  TTCCTCACAG CCATCTGCAT ACCAGCTTTT GCCAACCTCT GGAAGGGGAA GGGAACCCAT
  Y
  TGAGTCTCAG TGTCTGACAT CTGTGGTCAC TGCCCTACGT AAACCAACTT CCTAACTAAA
  AGGCTACCTC TCAACCTCTT TGACCTACCA GACTTGAAGT CCTGGCCACT CTCCTGGGAG
  GATGTGGGGG AATACTTAAC ATTCCTTTCT GAAGAGTCCA CGGCCAAGAA AACTAGATAT
  AGCTGATTTC TCAATCAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46858467	NES10699683	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33785239					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46858467	NES10699683	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107613602 () rs orientation: forward

Symbol	Name	Function Class
Gm40121	predicted gene, 40121	within coordinates
Rr583029	regulatory region 583029	1526 bp distal
Rr583030	regulatory region 583030	within coordinates