rs33787199 SNP Detail

Summary

• ID
  rs33787199
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:174039389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAGTGCA CATGCTGTTG
  AGATGTTTCA CAGGTAAGCA CCTTAACACT TCCATGGCAC TGCTCTGCTG GAGCCCCTTC
  AAAGAGCCTT TATGTCTAAT CACTATGGAG AACTATGGAG CTATCACAAT AGCTAAGAGT
  AAATAGCCCT CTTCCTCAAA AGAAGATAGT TTACCAGTAG AACACATTAT CGTTCAGCAA
  M
  AGTTTCCTCA CTTGACACAT TGACACATTG TCTCCAAGAT AACCAAATTC AGTTTTCAAT
  TAAGCATGGC ACATAATTTG TAGTTTAGAT ATTCCTATTA TGGAATCATA TTAATATTCA
  TATTCATAAT TCATATTAAT TGGAATCAAA TTTAATATAT GAATTGGACT TACGTTATTA
  TGTTTGAGAA ACAAGGTAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49530300	NES12832632	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33787199					SNP	A	A	A	A	A	C	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49530300	NES12832632	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:174039389 () rs orientation: forward

Symbol	Name	Function Class
Gm71183	predicted gene, 71183	within coordinates
Spta1	spectrin alpha, erythrocytic 1	within coordinates
Tssr10306	transcription start site region 10306	165 bp downstream