rs33788024 SNP Detail

Summary

• ID
  rs33788024
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:27937871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCGGTTAT TGGGTCAGCT
  AAAGCTGGAG GAGGAAGTCA CCAGTGATGT GGGCCCCTGG GAAAAAGCTC TCAGGGGAGC
  CTAGCAGGGC ACAAGGCTAG AACCAGCCTG GGTCACAGTG GCAGTGTGGC CGCCAGGTGA
  AGTCTGGTTC CAGCCAGTGT CCCAGCTTAG TGACCTGCAA GCTACACTGC TCCCACATCT
  Y
  GAGGCCATTT TCTTTCTTCC CGAGGTCAAT TCAATTTGTT TCTGTCCCCA TTGTTCAGAG
  AGCACACCCG CCTCACCCTG GAGCTGGAGG AAGCGCCTCT TCCTCATGGG AGAGCCTTCT
  GGAGTGTGGG AAAGTAGAGG AGAGATGTGG GTAGGAGCTG CCTTGAATGG GGACACCACC
  TGGGAACATC TAGCAGACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48359080	NES12236138	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T		T	C	C	C		C
ss325349187	CHEV_17_27855842	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33788024					SNP	C	C	C	C	C	C	T	C	C	T	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48359080	NES12236138	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27937871 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8855	CpG island 8855	1509 bp distal
Spdef	SAM pointed domain containing ets transcription factor	within coordinates