rs33788025 SNP Detail

Summary

• ID
  rs33788025
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:27937840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGAAATAG CTAGATTCTT
  AGCAGCTGCC CCAGCGGTTA TTGGGTCAGC TAAAGCTGGA GGAGGAAGTC ACCAGTGATG
  TGGGCCCCTG GGAAAAAGCT CTCAGGGGAG CCTAGCAGGG CACAAGGCTA GAACCAGCCT
  GGGTCACAGT GGCAGTGTGG CCGCCAGGTG AAGTCTGGTT CCAGCCAGTG TCCCAGCTTA
  R
  TGACCTGCAA GCTACACTGC TCCCACATCT CGAGGCCATT TTCTTTCTTC CCGAGGTCAA
  TTCAATTTGT TTCTGTCCCC ATTGTTCAGA GAGCACACCC GCCTCACCCT GGAGCTGGAG
  GAAGCGCCTC TTCCTCATGG GAGAGCCTTC TGGAGTGTGG GAAAGTAGAG GAGAGATGTG
  GGTAGGAGCT GCCTTGAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48359081	NES12236137	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33788025					SNP	G	G	G	G	G	G	A	G	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48359081	NES12236137	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27937840 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8855	CpG island 8855	1478 bp distal
Rr524285	regulatory region 524285	312 bp distal
Rr524286	regulatory region 524286	23 bp distal
Spdef	SAM pointed domain containing ets transcription factor	within coordinates