rs33788027 SNP Detail

Summary

• ID
  rs33788027
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:27937263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTGCCTGCT GGAGGCAGCC GGTACTGGTG
  TTCTGTCCAT AAAAGCCACT TCTGCACGTT ACCAGGGCTC CAGTCCCCAG GGTCTGGACA
  AGAGATACAC ACTAGTTCAA GGCTGCTGGT GGGCACTGCC CCAAAGGTGG CCGTCTGTGG
  R
  ATGGGACACC CATGAGGTTT TGTTGCCTGG GGCCATGCAC TCCTCAGGGT GGGAATGTCT
  AAAGCCTTGA GAAGCCCATG AAGGCACACT CCACCAAAAA GGAAGTGAGA GGGAAAGACC
  CTAAACCAAG CTTGTTGCCT TGGTAACCCA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48359083	NES12236135	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A		G	G	G	G		G
ss325349184	CHEV_17_27855234	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33788027					SNP	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48359083	NES12236135	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27937263 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8855	CpG island 8855	901 bp distal
Rr524285	regulatory region 524285	within coordinates
Rr524286	regulatory region 524286	533 bp proximal
Spdef	SAM pointed domain containing ets transcription factor	within coordinates