rs33788030 SNP Detail

Summary

• ID
  rs33788030
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:27935967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGGAGTG TGGATCTCTT
  GAGTGGCACA GTTGGCACAG GGTGAAGGTG AAGTCGATCT AGGCCACACC CCTACCCTGT
  GCCCCCTTCC GGGTGGCGCC ACTTTCCTAC CCAGCCTCAG TTGTAGGTCC ACCCATGCCC
  CCTACTCCAG CACTGCTCAT GCTCCTAGCT GGATTTCTGC CCTACAGAAA CCCTCCTTCG
  Y
  TGCGTTTCAC ATGGAAACCA CGCCTCCGAG TAGCCCCTCC CCTCTCGGCA CTCAGAGCCC
  CGCCCCTACG GCCCCGAGGC CCTACCTTCT CTCTCTCTCT AATCCCTCCT AACAAAGGTC
  AAGTCTCCTG CCAACCCCTC CCCGCCCTGG AGAACGGAGC CCCAGCCGAT TCTACCTTTC
  TCCTTGTTGA GCCAGCGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48359087	NES12236131	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33788030					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48359087	NES12236131	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27935967 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8855	CpG island 8855	20 bp proximal
Rr524285	regulatory region 524285	1193 bp proximal
Rr524286	regulatory region 524286	1829 bp proximal
Spdef	SAM pointed domain containing ets transcription factor	within coordinates