rs33788033 SNP Detail

Summary

• ID
  rs33788033
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:27934770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTTT CCTGGACAGG
  GTTTCTCTGT ATAGCCCTTG CGGTCCTGGA ACTCACTCTG TAAACCAGGC TGGTCTCGAA
  CTCAGAAATT CGCCTGCCTC TGCCTCCCAA GTGGTGGGAT TAAAGGCGTG AGCCACCACA
  CCCAGCTAAT TTTTACTTTT CTTACTGGTT GAAATTATAA CTTGTGTACA GTCTTATATC
  R
  AAGGCAGGTT GTGCATCTCT AATCTGAAAT TTTGGATCAG AACTGTGTCA GAGTTTGGAG
  TTTTAGGATT TGGGAATATT TGACAAGCTT TTCTGGGCCA GACATCTACA ATGGTATTCT
  GAAGAGTTTG TATTGGGGAT CGTTTGAGAA ATTGGGATTA AGGTCAGGCA ACCTACATCA
  TTAAAGTGAA ATCCAGTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48359092	NES12236178	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G		A	A	A	A		A
ss325349170	CHEV_17_27852741	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33788033					SNP	A	A	A	A	A	A	A	A	A	G	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48359092	NES12236178	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27934770 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8855	CpG island 8855	1217 bp proximal
Spdef	SAM pointed domain containing ets transcription factor	within coordinates