rs33788106 SNP Detail

Summary

• ID
  rs33788106
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:174039045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAACTCAT TTTTAGAGGT
  TCTAATTATA CTCCTTGGGA CAAGAGGAAT TTATGGTAAC CCAAAGATTA ATGGTCCTAT
  ACATAATATC AGTGGGGAAA AAAAAAGAAA TCCTATTCTC TATGGCACTC TTAAAAGTAG
  ACTAAGCTTG GGCTACGCAA CAGAGAAGCA AAGCTATGTG CACTCTATAG GGCTACCAGC
  M
  AAGCAAATTA CATGTCAGCT AGTCATAGAC AGCACTAAGC TGTCTGAACC GCTCTCTGAC
  TAAATCCTTG TCTACATCTT TTAGGAGTTG AACACCCGCT GGAATTCCCT GAAGAGGCTG
  GCAGATGAAC AGTATCAGCT GCTCAGCAGT GCACATGCTG TTGAGATGTT TCACAGGTAA
  GCACCTTAAC ACTTCCATGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49530307	NES12832625	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	A	C	A	C	C	A	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33788106					SNP	C	C	A	C	A	C	A	C	C	A	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49530307	NES12832625	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:174039045 () rs orientation: forward

Symbol	Name	Function Class
Gm71183	predicted gene, 71183	within coordinates
Spta1	spectrin alpha, erythrocytic 1	within coordinates
Tssr10306	transcription start site region 10306	175 bp upstream