rs33788688 SNP Detail

Summary

• ID
  rs33788688
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:27998863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGCGCAC GCCTTTAATC
  CCAGCACTCG GGAGGCAGAG GCAGGTGGAT TTCTGAGTTC AAGGCCAGCC TTGTCTACAA
  AGTGAGTTCC AGGACAGCCA GGGATACACA GAGAAACCCT GTCTCGAAAA ACCAAAAAAA
  AAAAAAAAAA AAAAAAAAAG AGAGAAACTA CAAAAGGAAA AACTGGTTTA ATGCCATTAT
  R
  CCAACGCCTG ACTCAAGCCT TCTACACCAT GTCAAAATAA AGGGCAAGTA AGACTCCCCA
  GGAAGGCAGA TAAGGAAGCG GGCAGAACCC ACAGGCTCCA GGCAGCAGGC TCACCATTCA
  TTCCCTCTGC ACAGGAGGAA GCACAAGCTC TTTCAAGACA AAAGAAAAAG AAAAGAAAAG
  GGGGGGGGGG GACTAGATGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48358794	NES12232600	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G		A	A	A		A
ss325349560	CHEV_17_27916834	CHEVERUD	SCREENING_POP	f	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33788688					SNP	A	A	A	A	A	A	A	A	A	G	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48358794	NES12232600	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27998863 () rs orientation: forward

Symbol	Name	Function Class
Ilrun	inflammation and lipid regulator with UBA-like and NBR1-like domains	within coordinates
Rr330146	regulatory region 330146	538 bp proximal
Rr330147	regulatory region 330147	1938 bp proximal
Tssr147065	transcription start site region 147065	1941 bp upstream