rs33788689 SNP Detail

Summary

• ID
  rs33788689
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:27998845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ggcagaggc aggtggattt ctgagttcaa
  ggccagcctt gtctacaaag tgagttccag gacagccagg gatacacaga gaaaccctgt
  ctcgaaaaac caaaaaaaaa aaaaaaaaaa aaaaaaagag agaaaCTACA AAAGGAAAAA
  Y
  TGGTTTAATG CCATTATACC AACGCCTGAC TCAAGCCTTC TACACCATGT CAAAATAAAG
  GGCAAGTAAG ACTCCCCAGG AAGGCAGATA AGGAAGCGGG CAGAACCCAC AGGCTCCAGG
  CAGCAGGCTC ACCATTCATT CCCTCTGCAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48358795	NES12232599	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T		C	C	C	C		C
ss325349559	CHEV_17_27916816	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33788689					SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48358795	NES12232599	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27998845 () rs orientation: forward

Symbol	Name	Function Class
Ilrun	inflammation and lipid regulator with UBA-like and NBR1-like domains	within coordinates
Rr330146	regulatory region 330146	556 bp proximal
Rr330147	regulatory region 330147	1956 bp proximal
Tssr147065	transcription start site region 147065	1923 bp upstream