rs33788690 SNP Detail

Summary

• ID
  rs33788690
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:27998301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAGTTCTTC CTTCCTTACC ACATCACCAC
  ACTGAGCTGT CCTGACCCCA CAGCTGTGCC TTGCACCAAG TGGAAAATAA ACTCCCAGTG
  CTGCCCTCCA CCATAGAAAC TGGTACAGTG TACTAGGAGT GGGTCTGCCC TACAGTGCGC
  R
  CCATTGACCA GCCGCACAGT GACATGGCAC TATGCCAAAA GAACCATATC GCATCATTTA
  TGCATGTTTT AAACTCATTT TAACTTCACT TACtgtttct atgtgggtgt gttcatccac
  cgcctgcttt cgaaggtcag aggacagacc                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48358796	NES12232715	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A		G	G	G	G		G
ss325349555	CHEV_17_27916272	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33788690					SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48358796	NES12232715	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27998301 () rs orientation: forward

Symbol	Name	Function Class
Ilrun	inflammation and lipid regulator with UBA-like and NBR1-like domains	within coordinates
Rr330146	regulatory region 330146	1100 bp proximal
Tssr147065	transcription start site region 147065	1379 bp upstream