rs33788693 SNP Detail

Summary

• ID
  rs33788693
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:27997758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTGTGTG AGTTTGAGGT
  CAGCTTAGGC TACATATTGA GTTCTAAGCC AGACAGACAC ATGAAGAGAC CCTATCTCAA
  AACATAACTA CAACAATAAC CACCCCACCT AAAACAACGA AACAATAATT GACACAGGCA
  GGAGGATCTG TTGAGAAGGG AGGGACTTTC TAGGGTCTTT CCTGTGACAG GCTCGCTCTC
  R
  CTCTAAGCCC TGACCACACT ACAGCCCAAA GGGCTTGAGG CTTGGCAGCC ATCCCTTCTC
  CATGCTGCTT GGACTCCTTA TCTAGTTACA GCTCCTGTGG AGGCACTAAG TGCTCTGTGG
  GTACTAGGCT CCACCACTCA GGTCTCCCTA AGGCTCACCC TAGGCAACGG ACCGGACCTA
  CTTTGAGAAG TCCATTTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48358800	NES12232699	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33788693					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48358800	NES12232699	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27997758 () rs orientation: forward

Symbol	Name	Function Class
Ilrun	inflammation and lipid regulator with UBA-like and NBR1-like domains	Intron
Rr524303	regulatory region 524303	307 bp distal
Rr524304	regulatory region 524304	within coordinates
Rr524305	regulatory region 524305	1110 bp proximal
Tssr147065	transcription start site region 147065	836 bp upstream