rs33788872 SNP Detail

Summary

• ID
  rs33788872
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28394923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTACCATGT GTCTTTGGAG
  TTCAGAGGAC AACTGGGGGA AACAGGTTCT CTTTTCCCAC CATATGGGTT CCAAGGATCA
  AACTCTTGCC AGCCCTGATG GTGAACTCTT GACCCTCCTG GTTTCACCTC CCCAGTGCAG
  GGGATTACAG TTGTACACCA CCGTGTCTGG CTTTCTTGCT GTATTTCTAA CCAATAATCC
  R
  TGCTATAAAA CCCTGGAAAG ATCCCATGTG TGTCGTGCTA GGATGGCAGA GCTGGCTCTA
  ACTGGGTATA TACTAGGGCA CCAGGTGGAA ATTCCAGTAC CACACTGGGA CCTCGGGGTT
  AACATGCCCG TGCCAAGGCT CCTCCCCCTT CATCTTCTTA TTTTTAATTG GAAGCTTATT
  TTCTCTCAAT TTCTGAAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss48357479	NES12230625	PERLEGEN	MM_PANEL2	f	SNP	A	G	A		G	A		G
ss325352116	CHEV_17_28312894	CHEVERUD	SCREENING_POP	f	SNP				A			G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs33788872					SNP	A	G	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48357479	NES12230625	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28394923 () rs orientation: forward

Symbol	Name	Function Class
C230013L11Rik	RIKEN cDNA C230013L11 gene	within coordinates
Cpgi8870	CpG island 8870	602 bp proximal
Rr339474	regulatory region 339474	77 bp proximal
Scube3	signal peptide, CUB domain, EGF-like 3	1095 bp downstream
Tssr143392	transcription start site region 143392	1181 bp upstream
Tssr143393	transcription start site region 143393	1447 bp upstream
Tssr147097	transcription start site region 147097	1692 bp downstream
Zfp523	zinc finger protein 523	1213 bp upstream