rs33789096 SNP Detail

Summary

• ID
  rs33789096
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28222662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGAACTG CATTTTCCTG
  CCCTGGCTGC AATGAGCACA GATTACTGGA AATGTGCAAA TACTAAATGT TATTATTCCA
  GAGTCCTCGA GGCCCCCGCA AAGCATCAGG GCAGTTAATG TTCAGCACAG AAGACCCCTT
  GCCTCCAGGG CTCGCAAGGG AAGGGACACC AGCACCAAAG TGAATAAAAT GCACTGCTGG
  S
  AATTACCTGC CATGCTGGGA GGCAGAGCGG GAGCTTGGGT GTGGGGAGAG GGAGAGACAG
  CCCACCTCCC CTGTGCAGAT CCTCTGTCTC CTGGAAGGAC TGACTGTGGG AGGAGAAGGA
  GGCTCTGTTC TCTGCTCCTC CAAGAGCTCT GGGCAGGATT TGGATGCCTG CTTCCTGGGG
  ACTTGCCTGC CTCTCTCAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48357974	NES12237209	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33789096					SNP	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48357974	NES12237209	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28222662 () rs orientation: forward

Symbol	Name	Function Class
Anks1	ankyrin repeat and SAM domain containing 1	within coordinates
Gm35290	predicted gene, 35290	1326 bp upstream
Rr340975	regulatory region 340975	within coordinates