rs33789099 SNP Detail

Summary

• ID
  rs33789099
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28221784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGACCTG GTGTGGGGCA
  GTCTAAAGTC CCAGACCTGG GCTGTCCCCA TGGGCACACA GGGAGGGATT GCTTGTTAGC
  ACGCAGAACC AAGTCTCAAG GCTGCTGGAC TTCCAGCTTT GGTTTTCTTC AGCCTGCTTT
  CAGGACTGCT TGGAAGAAAG CATCCCCTTA ACAGTTAGGA AAGTCAACCA AGCTCTGTGT
  R
  GGCCGTGACC TTACAGAGGA TTTTGAGCAT GGCTGTGCAT AGAGAATGAC ATAGAGACAG
  CAGTGGCTCC CTGGGCTAAG TGCCTGCCTA GCACAGGCAC CATGCTGGGT GGTTTCCCCT
  GATCACCTCA TTGTTTGTAA CTCAAGACTC AGCTTCAGGT TGGGGCTGGT TTTGTCCCTG
  TGTAATGGGG GTGGGGGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss48357979	NES12237204	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A		A	G	G		G
ss325351160	CHEV_17_28139755	CHEVERUD	SCREENING_POP	f	SNP						A				G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33789099					SNP	G	G	A	G	A	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48357979	NES12237204	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28221784 () rs orientation: forward

Symbol	Name	Function Class
Anks1	ankyrin repeat and SAM domain containing 1	within coordinates
Gm35290	predicted gene, 35290	448 bp upstream
Rr340975	regulatory region 340975	within coordinates