rs33789607 SNP Detail

Summary

• ID
  rs33789607
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:27997036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTG GGGGGGGGGG
  GGGGAGGGGC ATTGGCATGC TCCCTCCTTC CTCTCTCTCT GCTTCATGAG TGTGGATCAA
  GATGTAATAA GCTCCCAGCT GAAGGAGTGT AAATACAGGA ACCACGCTGG CCACACCCTT
  ATCGTCCAAG CACAGCGGAG GGAGGGTCAG TACTCAAAGT CAACCCTGAC TGACTCACAG
  Y
  CAAGTTCCAG GCAACAGATG ACCCTCTGAA AGGCGGACAC CACTGACAAC ACAGCTTCTC
  TACCAGGAGA GCATTAGAAG AAAGGGACCC ACAGCAGTGA TGGAATGGGG ATGTGCCACC
  AGATCCACGG GCTGCAGGGA CAGCAGGAAG AAACAGTAGC TGACACTCAG CTGACAAGTC
  CCAGAGTCGC TCTGCAGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss48358805	NES12232792	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C		C	T	T		T
ss325349544	CHEV_17_27915007	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33789607					SNP	T	T	T	T	T	T	T	T	C	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48358805	NES12232792	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27997036 () rs orientation: forward

Symbol	Name	Function Class
Ilrun	inflammation and lipid regulator with UBA-like and NBR1-like domains	Intron
Rr524303	regulatory region 524303	within coordinates
Rr524304	regulatory region 524304	676 bp proximal
Rr524305	regulatory region 524305	1832 bp proximal
Tssr147065	transcription start site region 147065	114 bp upstream